PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025116-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 241aa    MW: 26494.9 Da    PI: 6.7863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025116-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08123163954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  NNU_025116-RA 123 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 163
                    699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.078114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-14119175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13119174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-14120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6124163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-6137168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDSSHSSNNC SKPAWSLDMA MDMNPILSDQ LPCDFVCPNY PFQAHHQIQN NSSHVNSSCF  60
LNDQVGRQLM REEQEEPEEE LGAMKEMMYK IAAMQPVDID PATIRKPKRR NVRISNDPQS  120
VAARHRRERI SERIRILQRL VPGGTKMDTA SMLDEAIRYV KFLKRQVHQL QSNQHSPHVG  180
VIAGNFPAAG NWPVISSNAL GSASSSSAEP PVGAGFTIGG GGGGGSIPCD TMVFNHEVIS  240
D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245847.10.0PREDICTED: transcription factor HEC3-like
TrEMBLA0A061DIQ01e-74A0A061DIQ0_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGVIT_04s0044g01040.t013e-73(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.13e-39bHLH family protein